Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015920321.1_cds_XP_016469476.1_62017
CDS Infomation

[gene=LOC107791850] [db_xref=GeneID:107791850] [protein=aspartyl protease family protein 1-like] [protein_id=XP_016469476.1] [location=complement(join(30177..30445,30523..30594,30916..30976,31053..31152,31235..31308,31396..31531,31641..31865,31952..32187,32757..32892,33561..33871))] [gbkey=CDS]
Sequence

ATGGCTAATTCTTATACAAGTTTTAATTTTTTCCTTGCCCCTATTATTTTCTTGGCGATT
CTGGGATTGCAATTGCAGAGCAGCGATGGGTTTGGGACGTTCGGGTTTGATATCCATCAC
CGGTATTCGGATCCGGTGAAGGGTATTTTGGACCTTCATGGATTGCCTGAGAAGGGAAGT
GTTGAGTATTATTCAGCTTGGACTCAGCGTGATCGCTTTATCAAAGGTCGCCGCCTTGCT
GATACAACTAATCCCACTCCTCTCTCTTTTTCCGGAGGAAATGAAACTTTCCGCCTCAGT
TCTTTGGGATTTTTGCATTATGCAAATGTGACAGTGGGCACTCCTGGGCTATCATTTCTG
GTGGCACTTGACACTGGCAGTGACTTGTTTTGGCTACCCTGTGATTGCAGCAATTGTGTG
CGCGCCCTCGAGACACGCTCTGGACGACGAATAAATCTCAATATTTACAGCCCTAATACG
TCGTCAACGGGTCAGATTGTTCCTTGCAACGGCACTCTGTGTGGACAAAGGAGGCGATGC
TTATCTTCACAAAACGCATGTGCTTATGGAGTTGCATATCTCTCCAATAATACCTCATCA
TCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAGACAGATAATGCTCAACAAAAAAGT
GTTGAGGCTCCAATTGCTCTAGGGTGTGGGATAAGACAAACCGGTGCATTTTTAAGTGGC
GCTGCTCCTAATGGTCTATTTGGACTTGGCTTGGAAAGTATATCTGTTCCGAGCATGTTA
GCAAGTAAAGGTCTTGCTGCAAATTCTTTCTCCATGTGCTTTGGCCCTGATGGTATTGGA
AGAATAGTGTTTGGAGATAAAGGGAGTCCAGACCAAGGAGAAACACCACTCAATCTTGAT
CAACTACACCCAACCTATAACATCAGCTTGACAGGAATAACAGTGGGAAACAAGATCACT
GATGTTGATTTCACAGCCATTTTTGACTCTGGCACCTCATTCACATACTTGAACGACCCA
GCTTACAAAGTCATTACAGAGAACTTTGATTCTCAAGCAAAACAGCTACGTATTCAACCT
GATGGCGAAATTCCTTTTGAATACTGCTACGGGCTAAGTGCAAATCAAACTACATTCGAA
GTTCCTGATTTAAATTTGACAATGAAAGGCGGCAACCAGTTTTTTCTTTTCGATCCGATA
ATTATGCTCTCGCTCCAGGATGGTTCTCGCGCATTTTGCTTAGCTGTTGTGAAAAGTGGG
GATGTCAACATCATTGGACAAAATTTTATGACAGGCTATCGCGTGGTTTTTGATCGAGAG
AAGATGGTTTTGGGTTGGAAACCATCCGATTGTTATGATTCTAGAGAATCCAACGACAAA
TCGACAACTCTGCCAGTGAACAAACGTAATTCTACTGAAGCGCCGTCGCCCTCCAGTGTG
GTGCCAGAGGCCACCAAGGGAAATGGAAGTGGAAATGAACCCGCTACTTCGTTTCCATCT
GTTCCGTCATCTAGACCTGCAATAAACCATGCACCAGCACATTTCAATTCCTACATTTGC
CAACTTATGATGGCTCTGTTTTCCCTTTTTAGCTATTATTTGATCATTGTTTCTTCATGA

Peptide Sequence

PEP ID

XP_016469476.1
PEP Infomation

PREDICTED: aspartyl protease family protein 1-like [Nicotiana tabacum]
Sequence

MANSYTSFNFFLAPIIFLAILGLQLQSSDGFGTFGFDIHHRYSDPVKGILDLHGLPEKGS
VEYYSAWTQRDRFIKGRRLADTTNPTPLSFSGGNETFRLSSLGFLHYANVTVGTPGLSFL
VALDTGSDLFWLPCDCSNCVRALETRSGRRINLNIYSPNTSSTGQIVPCNGTLCGQRRRC
LSSQNACAYGVAYLSNNTSSSGVLVEDILHLETDNAQQKSVEAPIALGCGIRQTGAFLSG
AAPNGLFGLGLESISVPSMLASKGLAANSFSMCFGPDGIGRIVFGDKGSPDQGETPLNLD
QLHPTYNISLTGITVGNKITDVDFTAIFDSGTSFTYLNDPAYKVITENFDSQAKQLRIQP
DGEIPFEYCYGLSANQTTFEVPDLNLTMKGGNQFFLFDPIIMLSLQDGSRAFCLAVVKSG
DVNIIGQNFMTGYRVVFDREKMVLGWKPSDCYDSRESNDKSTTLPVNKRNSTEAPSPSSV
VPEATKGNGSGNEPATSFPSVPSSRPAINHAPAHFNSYICQLMMALFSLFSYYLIIVSS

Transcript Sequence

Gene sequence data has not been registered.